IL_5T7V_016

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUC*GAAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_016 not in the Motif Atlas

Geometric match to IL_6CK5_002

Geometric discrepancy: 0.3708

The information below is about IL_6CK5_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_36516.3

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

5T7V|1|A|G|605
5T7V|1|A|U|606
5T7V|1|A|C|607
*
5T7V|1|A|G|647
5T7V|1|A|A|648
5T7V|1|A|A|649
5T7V|1|A|A|650
5T7V|1|A|C|651

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain S8

30S ribosomal protein S17

Chain SF

30S ribosomal protein S8