IL_5T7V_048

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_048 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.1258

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5T7V|1|B|C|241
5T7V|1|B|U|242
5T7V|1|B|U|243
5T7V|1|B|A|244
5T7V|1|B|G|245
5T7V|1|B|U|246
5T7V|1|B|A|247
5T7V|1|B|G|248
*
5T7V|1|B|C|256
5T7V|1|B|G|257
5T7V|1|B|A|258
5T7V|1|B|A|259
5T7V|1|B|A|260
5T7V|1|B|C|261
5T7V|1|B|G|262

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain LH

50S ribosomal protein L35

Chain LO

50S ribosomal protein L15