IL_5T7V_052

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_052 not in the Motif Atlas

Homologous match to IL_4WF9_016

Geometric discrepancy: 0.1656

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

5T7V|1|B|A|581
5T7V|1|B|G|582
5T7V|1|B|A|583
5T7V|1|B|G|584
*
5T7V|1|B|U|597
5T7V|1|B|G|598
5T7V|1|B|A|599
5T7V|1|B|U|600

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L3

50S ribosomal protein L20

Chain LM

50S ribosomal protein L13