IL_5T7V_056

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5T7V|1|B|G|846, 5T7V|1|B|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_056 not in the Motif Atlas

Geometric match to IL_4WF9_021

Geometric discrepancy: 0.1638

The information below is about IL_4WF9_021

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5T7V|1|B|G|719
5T7V|1|B|A|720
5T7V|1|B|A|721
5T7V|1|B|A|722
5T7V|1|B|C|723
*
5T7V|1|B|G|844
5T7V|1|B|A|845
5T7V|1|B|G|846
5T7V|1|B|A|847
5T7V|1|B|U|848
5T7V|1|B|A|849
5T7V|1|B|G|850
5T7V|1|B|C|851

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain LJ

50S ribosomal protein L4

Chain LO

50S ribosomal protein L15