IL_5T7V_064
3D structure
- PDB id
- 5T7V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5T7V_064 not in the Motif Atlas
- Geometric match to IL_4WF9_031
- Geometric discrepancy: 0.1226
- The information below is about IL_4WF9_031
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5T7V|1|B|G|901
5T7V|1|B|A|902
5T7V|1|B|G|903
5T7V|1|B|G|904
5T7V|1|B|U|905
5T7V|1|B|A|906
5T7V|1|B|G|907
*
5T7V|1|B|C|960
5T7V|1|B|G|961
5T7V|1|B|A|962
5T7V|1|B|A|963
5T7V|1|B|U|964
5T7V|1|B|G|965
5T7V|1|B|C|966
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain C
- 5S ribosomal RNA; 5S rRNA
- Chain L9
- 50S ribosomal protein L27
- Chain LD
- 50S ribosomal protein L30
- Chain LP
- 50S ribosomal protein L16
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