IL_5T7V_065

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAG*CUCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_065 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3019

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5T7V|1|B|G|907
5T7V|1|B|A|908
5T7V|1|B|G|909
*
5T7V|1|B|C|957
5T7V|1|B|U|958
5T7V|1|B|C|959
5T7V|1|B|C|960

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain C

5S ribosomal RNA; 5S rRNA

Chain L9

50S ribosomal protein L27

Chain LP

50S ribosomal protein L16