IL_5T7V_066

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_066 not in the Motif Atlas

Geometric match to IL_4WF9_033

Geometric discrepancy: 0.1475

The information below is about IL_4WF9_033

Detailed Annotation

C-loop with bulged stacked A's

Broad Annotation

C-loop

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

5T7V|1|B|G|909
5T7V|1|B|C|910
5T7V|1|B|A|911
5T7V|1|B|C|912
5T7V|1|B|U|913
*
5T7V|1|B|A|954
5T7V|1|B|A|955
5T7V|1|B|A|956
5T7V|1|B|C|957

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain C

5S ribosomal RNA; 5S rRNA

Chain LP

50S ribosomal protein L16