IL_5T7V_071

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_071 not in the Motif Atlas

Geometric match to IL_4WF9_039

Geometric discrepancy: 0.1526

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

5T7V|1|B|U|1062
5T7V|1|B|U|1063
5T7V|1|B|A|1064
5T7V|1|B|A|1065
5T7V|1|B|G|1066
5T7V|1|B|U|1067
5T7V|1|B|G|1068
*
5T7V|1|B|C|1184
5T7V|1|B|U|1185
5T7V|1|B|A|1186
5T7V|1|B|A|1187
5T7V|1|B|A|1188

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain LI

50S ribosomal protein L36

Chain LL

50S ribosomal protein L6

Chain LM

50S ribosomal protein L13