IL_5T7V_082

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

5T7V|1|B|G|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_082 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.1981

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

5T7V|1|B|G|1356
5T7V|1|B|G|1357
5T7V|1|B|A|1358
5T7V|1|B|A|1359
5T7V|1|B|G|1360
*
5T7V|1|B|C|1368
5T7V|1|B|G|1369
5T7V|1|B|C|1370

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L5

50S ribosomal protein L22