IL_5T7V_098

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

5T7V|1|B|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_098 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1569

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

5T7V|1|B|C|1730
5T7V|1|B|G|1731
5T7V|1|B|U|1732
5T7V|1|B|A|1733
5T7V|1|B|A|1734
5T7V|1|B|C|1735
*
5T7V|1|B|G|1740
5T7V|1|B|G|1741
5T7V|1|B|A|1742
5T7V|1|B|G|1743
5T7V|1|B|A|1744
5T7V|1|B|A|1745
5T7V|1|B|G|1746

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain L2

50S ribosomal protein L2