IL_5T7V_126

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

5T7V|1|B|G|2603, 5T7V|1|B|A|2604

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_126 not in the Motif Atlas

Homologous match to IL_7RQB_097

Geometric discrepancy: 0.1975

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

5T7V|1|B|C|2537
5T7V|1|B|U|2538
5T7V|1|B|C|2539
*
5T7V|1|B|G|2601
5T7V|1|B|C|2602
5T7V|1|B|G|2603
5T7V|1|B|A|2604
5T7V|1|B|G|2605

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain LC

50S ribosomal protein L3

Chain LE

50S ribosomal protein L32