IL_5T7V_130

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUAGUAC*GGACCGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_130 not in the Motif Atlas

Geometric match to IL_5J7L_289

Geometric discrepancy: 0.3286

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

5T7V|1|B|C|2678
5T7V|1|B|U|2679
5T7V|1|B|U|2680
5T7V|1|B|A|2681
5T7V|1|B|G|2682
5T7V|1|B|U|2683
5T7V|1|B|A|2684
5T7V|1|B|C|2685
*
5T7V|1|B|G|2690
5T7V|1|B|G|2691
5T7V|1|B|A|2692
5T7V|1|B|C|2693
5T7V|1|B|C|2694
5T7V|1|B|G|2695
5T7V|1|B|G|2696

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain LL

50S ribosomal protein L6

Chain LN

50S ribosomal protein L14