IL_5T7V_181

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAACUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_181 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1235

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5T7V|1|B|G|1710
5T7V|1|B|G|1711
5T7V|1|B|A|1712
5T7V|1|B|A|1713
5T7V|1|B|C|1714
5T7V|1|B|U|1715
5T7V|1|B|C|1716
5T7V|1|B|G|1717
5T7V|1|B|G|1718
*
5T7V|1|B|C|2017
5T7V|1|B|U|2018
5T7V|1|B|G|2019
5T7V|1|B|U|2020
5T7V|1|B|C|2021

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain LC

50S ribosomal protein L3

Chain LN

50S ribosomal protein L14