IL_5T7V_184

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGC*GAUU

Length

7 nucleotides

Bulged bases

5T7V|1|B|A|2008

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_184 not in the Motif Atlas

Geometric match to IL_4V88_465

Geometric discrepancy: 0.2204

The information below is about IL_4V88_465

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5T7V|1|B|A|1796
5T7V|1|B|G|1797
5T7V|1|B|C|1798
*
5T7V|1|B|G|2007
5T7V|1|B|A|2008
5T7V|1|B|U|2009
5T7V|1|B|U|2010

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain L2

50S ribosomal protein L2