IL_5T7V_194

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_194 not in the Motif Atlas

Homologous match to IL_4WF9_100

Geometric discrepancy: 0.1362

The information below is about IL_4WF9_100

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

5T7V|1|B|U|2679
5T7V|1|B|U|2680
5T7V|1|B|A|2681
5T7V|1|B|G|2682
5T7V|1|B|U|2683
5T7V|1|B|A|2684
5T7V|1|B|C|2685
*
5T7V|1|B|G|2690
5T7V|1|B|G|2691
5T7V|1|B|A|2692
5T7V|1|B|C|2693
5T7V|1|B|C|2694
5T7V|1|B|G|2695

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain LL

50S ribosomal protein L6