IL_5T7V_209

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AC*GGAU

Length

6 nucleotides

Bulged bases

5T7V|1|B|A|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_209 not in the Motif Atlas

Geometric match to IL_5J7L_316

Geometric discrepancy: 0.3185

The information below is about IL_5J7L_316

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_68140.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

18

Unit IDs

5T7V|1|B|A|305
5T7V|1|B|C|306
*
5T7V|1|B|G|409
5T7V|1|B|G|410
5T7V|1|B|A|411
5T7V|1|B|U|412

Current chains

Chain B

23S ribosomal RNA

Nearby chains