IL_5T7V_220

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUAAGG*CUGAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_220 not in the Motif Atlas

Geometric match to IL_4N0T_001

Geometric discrepancy: 0.3869

The information below is about IL_4N0T_001

Detailed Annotation

Double sheared; A in syn; two near cWW pairs

Broad Annotation

Double sheared; A in syn; two near cWW pairs

Motif group

IL_71294.3

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

5T7V|1|B|G|1518
5T7V|1|B|U|1519
5T7V|1|B|A|1520
5T7V|1|B|A|1521
5T7V|1|B|G|1522
5T7V|1|B|G|1523
*
5T7V|1|B|C|1557
5T7V|1|B|U|1558
5T7V|1|B|G|1559
5T7V|1|B|A|1560
5T7V|1|B|G|1561
5T7V|1|B|C|1562

Current chains

Chain B

23S ribosomal RNA

Nearby chains