IL_5T7V_222

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

5T7V|1|B|U|2753

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_222 not in the Motif Atlas

Homologous match to IL_4WF9_101

Geometric discrepancy: 0.1638

The information below is about IL_4WF9_101

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

5T7V|1|B|C|2707
5T7V|1|B|C|2708
5T7V|1|B|U|2709
5T7V|1|B|C|2710
5T7V|1|B|U|2711
*
5T7V|1|B|A|2752
5T7V|1|B|U|2753
5T7V|1|B|G|2754

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L19

Chain LC

50S ribosomal protein L3

Chain LN

50S ribosomal protein L14