IL_5T7V_223

3D structure

PDB id

5T7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methicillin Resistant, Linezolid resistant Staphylococcus aureus 70S ribosome (delta S145 uL3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUG*CAUAG

Length

8 nucleotides

Bulged bases

5T7V|1|B|U|2723, 5T7V|1|B|U|2739, 5T7V|1|B|A|2740

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5T7V_223 not in the Motif Atlas

Geometric match to IL_4M4O_001

Geometric discrepancy: 0.3968

The information below is about IL_4M4O_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

5T7V|1|B|U|2722
5T7V|1|B|U|2723
5T7V|1|B|G|2724
*
5T7V|1|B|C|2737
5T7V|1|B|A|2738
5T7V|1|B|U|2739
5T7V|1|B|A|2740
5T7V|1|B|G|2741

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L1

50S ribosomal protein L19

Chain LQ

50S ribosomal protein L17