IL_5TBW_011

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUC*GAGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.3

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

8

Unit IDs

5TBW|1|1|U|177
5TBW|1|1|U|178
5TBW|1|1|C|179
*
5TBW|1|1|G|237
5TBW|1|1|A|238
5TBW|1|1|G|239
5TBW|1|1|U|240
5TBW|1|1|G|241

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain AI

60S ribosomal protein L35-A

Chain AK

60S ribosomal protein L37-A

Chain t

60S ribosomal protein L13-A