IL_5TBW_040

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCGAAU*AAAC

Length

10 nucleotides

Bulged bases

5TBW|1|1|G|1001

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_02509.3

Basepair signature

cWW-cWS-cWW-cWW-R-cSH-tWH-R

Number of instances in this motif group

6

Unit IDs

5TBW|1|1|G|999
5TBW|1|1|C|1000
5TBW|1|1|G|1001
5TBW|1|1|A|1002
5TBW|1|1|A|1003
5TBW|1|1|U|1004
*
5TBW|1|1|A|1046
5TBW|1|1|A|1047
5TBW|1|1|A|1048
5TBW|1|1|C|1049

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 2

60S ribosomal protein L21-A

Chain 3

5S ribosomal RNA; 5S rRNA

Chain m

60S ribosomal protein L5

Chain r

60S ribosomal protein L10