IL_5TBW_088

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

5TBW|1|1|U|2211
5TBW|1|1|C|2212
5TBW|1|1|A|2213
5TBW|1|1|A|2214
5TBW|1|1|A|2215
5TBW|1|1|G|2216
5TBW|1|1|U|2217
*
5TBW|1|1|A|2228
5TBW|1|1|A|2229
5TBW|1|1|C|2230
5TBW|1|1|C|2231
5TBW|1|1|A|2232
5TBW|1|1|A|2233
5TBW|1|1|G|2234

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AJ

60S ribosomal protein L36-A

Chain AP

60S ribosomal protein L42-A