IL_5TBW_096

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUGAAGC*GGGU

Length

11 nucleotides

Bulged bases

5TBW|1|1|G|2522, 5TBW|1|1|G|2585, 5TBW|1|1|G|2586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74114.1

Basepair signature

cWW-cWS-cWW-L-R

Number of instances in this motif group

2

Unit IDs

5TBW|1|1|A|2520
5TBW|1|1|U|2521
5TBW|1|1|G|2522
5TBW|1|1|A|2523
5TBW|1|1|A|2524
5TBW|1|1|G|2525
5TBW|1|1|C|2526
*
5TBW|1|1|G|2584
5TBW|1|1|G|2585
5TBW|1|1|G|2586
5TBW|1|1|U|2587

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 8

60S ribosomal protein L25

Chain j

60S ribosomal protein L2-A

Chain p

60S ribosomal protein L8-A