IL_5TBW_105

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

5TBW|1|1|U|2860

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

5TBW|1|1|G|2828
5TBW|1|1|U|2829
5TBW|1|1|G|2830
*
5TBW|1|1|U|2858
5TBW|1|1|U|2859
5TBW|1|1|U|2860
5TBW|1|1|U|2861
5TBW|1|1|U|2862

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain k

60S ribosomal protein L3

Chain r

60S ribosomal protein L10