IL_5TBW_106

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5TBW|1|1|U|2835
5TBW|1|1|C|2836
5TBW|1|1|A|2837
5TBW|1|1|A|2838
5TBW|1|1|G|2839
*
5TBW|1|1|C|2849
5TBW|1|1|G|2850
5TBW|1|1|A|2851
5TBW|1|1|C|2852
5TBW|1|1|A|2853

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AN

Ubiquitin-60S ribosomal protein L40

Chain r

60S ribosomal protein L10