IL_5TBW_218

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUGC*GUUAUC

Length

10 nucleotides

Bulged bases

5TBW|1|A|U|1370, 5TBW|1|A|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_218 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3834

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

5TBW|1|A|G|1352
5TBW|1|A|U|1353
5TBW|1|A|G|1354
5TBW|1|A|C|1355
*
5TBW|1|A|G|1368
5TBW|1|A|U|1369
5TBW|1|A|U|1370
5TBW|1|A|A|1371
5TBW|1|A|U|1372
5TBW|1|A|C|1373

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain R

40S ribosomal protein S16-A

Chain U

40S ribosomal protein S19-A

Chain V

40S ribosomal protein S20