IL_5TBW_251
3D structure
- PDB id
- 5TBW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUGAAAU*ACGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5TBW_251 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0414
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5TBW|1|AR|G|404
5TBW|1|AR|U|405
5TBW|1|AR|G|406
5TBW|1|AR|A|407
5TBW|1|AR|A|408
5TBW|1|AR|A|409
5TBW|1|AR|U|410
*
5TBW|1|AT|A|13
5TBW|1|AT|C|14
5TBW|1|AT|G|15
5TBW|1|AT|G|16
5TBW|1|AT|A|17
5TBW|1|AT|U|18
5TBW|1|AT|C|19
Current chains
- Chain AR
- 25S ribosomal RNA
- Chain AT
- 5.8S ribosomal RNA
Nearby chains
- Chain CF
- 60S ribosomal protein L4-A
- Chain CR
- 60S ribosomal protein L17-A
- Chain DG
- 60S ribosomal protein L32
Coloring options: