IL_5TBW_262

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_262 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.0612

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5TBW|1|AR|C|758
5TBW|1|AR|U|759
5TBW|1|AR|G|760
5TBW|1|AR|A|761
5TBW|1|AR|U|762
5TBW|1|AR|G|763
*
5TBW|1|AR|C|768
5TBW|1|AR|G|769
5TBW|1|AR|G|770
5TBW|1|AR|A|771
5TBW|1|AR|U|772
5TBW|1|AR|G|773

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CN

60S ribosomal protein L13-A

Chain DC

60S ribosomal protein L28

Chain DQ

60S ribosomal protein L42-A