IL_5TBW_267

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUU*AUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_267 not in the Motif Atlas

Homologous match to IL_5TBW_031

Geometric discrepancy: 0.0499

The information below is about IL_5TBW_031

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

5TBW|1|AR|G|869
5TBW|1|AR|G|870
5TBW|1|AR|U|871
5TBW|1|AR|U|872
*
5TBW|1|AR|A|888
5TBW|1|AR|U|889
5TBW|1|AR|C|890

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DL

60S ribosomal protein L37-A