IL_5TBW_273

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGU*AU

Length

5 nucleotides

Bulged bases

5TBW|1|AR|G|984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_273 not in the Motif Atlas

Homologous match to IL_5TBW_037

Geometric discrepancy: 0.0422

The information below is about IL_5TBW_037

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

49

Unit IDs

5TBW|1|AR|A|983
5TBW|1|AR|G|984
5TBW|1|AR|U|985
*
5TBW|1|AR|A|1099
5TBW|1|AR|U|1100

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CI

60S ribosomal protein L7-A

Chain CS

60S ribosomal protein L18-A

Chain CV

60S ribosomal protein L21-A

Chain DD

60S ribosomal protein L29