IL_5TBW_281

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAC*GA

Length

5 nucleotides

Bulged bases

5TBW|1|AR|A|1075

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_281 not in the Motif Atlas

Geometric match to IL_5TBW_045

Geometric discrepancy: 0.0841

The information below is about IL_5TBW_045

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

5TBW|1|AR|U|1074
5TBW|1|AR|A|1075
5TBW|1|AR|C|1076
*
5TBW|1|AR|G|1083
5TBW|1|AR|A|1084

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CG

60S ribosomal protein L5

Chain CV

60S ribosomal protein L21-A

Chain DD

60S ribosomal protein L29