IL_5TBW_314

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

5TBW|1|AR|U|1931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_314 not in the Motif Atlas

Homologous match to IL_5TBW_078

Geometric discrepancy: 0.0532

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5TBW|1|AR|C|1918
5TBW|1|AR|G|1919
5TBW|1|AR|U|1920
5TBW|1|AR|A|1921
5TBW|1|AR|A|1922
5TBW|1|AR|C|1923
*
5TBW|1|AR|G|1928
5TBW|1|AR|G|1929
5TBW|1|AR|A|1930
5TBW|1|AR|U|1931
5TBW|1|AR|A|1932
5TBW|1|AR|A|1933
5TBW|1|AR|G|1934

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DP

60S ribosomal protein L41-A

Chain DR

60S ribosomal protein L43-A

Chain sR

Small subunit ribosomal RNA; SSU rRNA