IL_5TBW_325

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GCAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_325 not in the Motif Atlas

Homologous match to IL_5TBW_089

Geometric discrepancy: 0.0696

The information below is about IL_5TBW_089

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

5TBW|1|AR|G|2276
5TBW|1|AR|C|2277
*
5TBW|1|AR|G|2307
5TBW|1|AR|C|2308
5TBW|1|AR|A|2309
5TBW|1|AR|U|2310

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DP

60S ribosomal protein L41-A

Chain sR

Small subunit ribosomal RNA; SSU rRNA