IL_5TBW_344

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CU*AACG

Length

6 nucleotides

Bulged bases

5TBW|1|AR|A|2941, 5TBW|1|AR|C|2942

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_344 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.0583

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

5TBW|1|AR|C|2881
5TBW|1|AR|U|2882
*
5TBW|1|AR|A|2940
5TBW|1|AR|A|2941
5TBW|1|AR|C|2942
5TBW|1|AR|G|2943

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain CQ

60S ribosomal protein L16-A

Chain CX

60S ribosomal protein L23-A