IL_5TBW_356

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCACAC*GCGUGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_356 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.2845

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

5TBW|1|AR|C|3161
5TBW|1|AR|C|3162
5TBW|1|AR|A|3163
5TBW|1|AR|C|3164
5TBW|1|AR|A|3165
5TBW|1|AR|C|3166
*
5TBW|1|AR|G|3284
5TBW|1|AR|C|3285
5TBW|1|AR|G|3286
5TBW|1|AR|U|3287
5TBW|1|AR|G|3288
5TBW|1|AR|G|3289

Current chains

Chain AR

25S ribosomal RNA

Nearby chains