IL_5TBW_372

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases (A, C, G, U)

64A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_37497.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

120

Unit IDs

5TBW|1|AS|C|15
5TBW|1|AS|U|16
*
5TBW|1|AS|A|63
5TBW|1|AS|A|64
5TBW|1|AS|G|65

Current chains

Chain AS

5S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA

Chain CG

60S ribosomal protein L5

Chain CL

60S ribosomal protein L10

Chain CM

60S ribosomal protein L11-B