IL_5TBW_378

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGUG*CAU

Length

7 nucleotides

Bulged bases

5TBW|1|AS|U|86

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5TBW|1|AS|A|84
5TBW|1|AS|G|85
5TBW|1|AS|U|86
5TBW|1|AS|G|87
*
5TBW|1|AS|C|94
5TBW|1|AS|A|95
5TBW|1|AS|U|96

Current chains

Chain AS

5S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA

Chain CI

60S ribosomal protein L7-A

Chain CL

60S ribosomal protein L10

Chain CU

60S ribosomal protein L20-A