IL_5TBW_398

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAUAAAAAAUCAAUGUCUUCGGACUCUUUG*CAU

Length

34 nucleotides

Bulged bases

5TBW|1|sR|U|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TBW|1|sR|A|213
5TBW|1|sR|G|214
5TBW|1|sR|A|215
5TBW|1|sR|U|216
5TBW|1|sR|A|217
5TBW|1|sR|A|218
5TBW|1|sR|A|219
5TBW|1|sR|A|220
5TBW|1|sR|A|221
5TBW|1|sR|A|222
5TBW|1|sR|U|223
5TBW|1|sR|C|224
5TBW|1|sR|A|225
5TBW|1|sR|A|226
5TBW|1|sR|U|227
5TBW|1|sR|G|228
5TBW|1|sR|U|229
5TBW|1|sR|C|230
5TBW|1|sR|U|231
5TBW|1|sR|U|232
5TBW|1|sR|C|233
5TBW|1|sR|G|234
5TBW|1|sR|G|235
5TBW|1|sR|A|236
5TBW|1|sR|C|237
5TBW|1|sR|U|238
5TBW|1|sR|C|239
5TBW|1|sR|U|240
5TBW|1|sR|U|241
5TBW|1|sR|U|242
5TBW|1|sR|G|243
*
5TBW|1|sR|C|250
5TBW|1|sR|A|251
5TBW|1|sR|U|252

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A

Chain s4

40S ribosomal protein S4-A

Chain s6

40S ribosomal protein S6-A

Chain s8

40S ribosomal protein S8-A