IL_5TBW_418

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUGGC*GAUUUCCAA

Length

14 nucleotides

Bulged bases

5TBW|1|sR|U|681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_418 not in the Motif Atlas

Homologous match to IL_4V88_420

Geometric discrepancy: 0.22

The information below is about IL_4V88_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97253.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

5TBW|1|sR|U|649
5TBW|1|sR|U|650
5TBW|1|sR|G|651
5TBW|1|sR|G|652
5TBW|1|sR|C|653
*
5TBW|1|sR|G|677
5TBW|1|sR|A|678
5TBW|1|sR|U|679
5TBW|1|sR|U|680
5TBW|1|sR|U|681
5TBW|1|sR|C|682
5TBW|1|sR|C|683
5TBW|1|sR|A|684
5TBW|1|sR|A|685

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain d2

40S ribosomal protein S22-A

Chain s9

40S ribosomal protein S9-A