IL_5TBW_463

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_463 not in the Motif Atlas

Homologous match to IL_4V88_467

Geometric discrepancy: 0.0442

The information below is about IL_4V88_467

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5TBW|1|sR|U|1650
5TBW|1|sR|A|1651
5TBW|1|sR|C|1652
*
5TBW|1|sR|G|1748
5TBW|1|sR|A|1749
5TBW|1|sR|A|1750

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA

Chain DP

60S ribosomal protein L41-A

Chain d3

40S ribosomal protein S23-A