IL_5TBW_491
3D structure
- PDB id
- 5TBW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGCUGGAAUUCAUUUUCCACGUUCUAGCAUUCAAG*UGAU
- Length
- 39 nucleotides
- Bulged bases
- 5TBW|1|AR|C|2539, 5TBW|1|AR|A|2540, 5TBW|1|AR|G|2549, 5TBW|1|AR|U|2550, 5TBW|1|AR|U|2551, 5TBW|1|AR|C|2552, 5TBW|1|AR|U|2553, 5TBW|1|AR|A|2554, 5TBW|1|AR|U|2558, 5TBW|1|AR|U|2559, 5TBW|1|AR|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5TBW|1|AR|A|2529
5TBW|1|AR|G|2530
5TBW|1|AR|C|2531
5TBW|1|AR|U|2532
5TBW|1|AR|G|2533
5TBW|1|AR|G|2534
5TBW|1|AR|A|2535
5TBW|1|AR|A|2536
5TBW|1|AR|U|2537
5TBW|1|AR|U|2538
5TBW|1|AR|C|2539
5TBW|1|AR|A|2540
5TBW|1|AR|U|2541
5TBW|1|AR|U|2542
5TBW|1|AR|U|2543
5TBW|1|AR|U|2544
5TBW|1|AR|C|2545
5TBW|1|AR|C|2546
5TBW|1|AR|A|2547
5TBW|1|AR|C|2548
5TBW|1|AR|G|2549
5TBW|1|AR|U|2550
5TBW|1|AR|U|2551
5TBW|1|AR|C|2552
5TBW|1|AR|U|2553
5TBW|1|AR|A|2554
5TBW|1|AR|G|2555
5TBW|1|AR|C|2556
5TBW|1|AR|A|2557
5TBW|1|AR|U|2558
5TBW|1|AR|U|2559
5TBW|1|AR|C|2560
5TBW|1|AR|A|2561
5TBW|1|AR|A|2562
5TBW|1|AR|G|2563
*
5TBW|1|AR|U|2578
5TBW|1|AR|G|2579
5TBW|1|AR|A|2580
5TBW|1|AR|U|2581
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CD
- 60S ribosomal protein L2-A
- Chain CJ
- 60S ribosomal protein L8-A
- Chain CZ
- 60S ribosomal protein L25
- Chain DB
- 60S ribosomal protein L27-A
- Chain DE
- 60S ribosomal protein L30
- Chain DI
- 60S ribosomal protein L34-A
- Chain DR
- 60S ribosomal protein L43-A
- Chain s1
- 40S ribosomal protein S1-A
Coloring options: