IL_5TBW_494

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

5TBW|1|sR|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_494 not in the Motif Atlas

Homologous match to IL_8P9A_399

Geometric discrepancy: 0.1444

The information below is about IL_8P9A_399

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

5TBW|1|sR|A|481
5TBW|1|sR|U|482
*
5TBW|1|sR|A|505
5TBW|1|sR|A|506
5TBW|1|sR|U|507

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain s9

40S ribosomal protein S9-A