IL_5TBW_499

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACAAUAAGGAUUG*CUUGAUUUUGU

Length

24 nucleotides

Bulged bases

5TBW|1|sR|G|1228, 5TBW|1|sR|U|1257

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TBW|1|sR|A|1221
5TBW|1|sR|C|1222
5TBW|1|sR|A|1223
5TBW|1|sR|A|1224
5TBW|1|sR|U|1225
5TBW|1|sR|A|1226
5TBW|1|sR|A|1227
5TBW|1|sR|G|1228
5TBW|1|sR|G|1229
5TBW|1|sR|A|1230
5TBW|1|sR|U|1231
5TBW|1|sR|U|1232
5TBW|1|sR|G|1233
*
5TBW|1|sR|C|1252
5TBW|1|sR|U|1253
5TBW|1|sR|U|1254
5TBW|1|sR|G|1255
5TBW|1|sR|A|1256
5TBW|1|sR|U|1257
5TBW|1|sR|U|1258
5TBW|1|sR|U|1259
5TBW|1|sR|U|1260
5TBW|1|sR|G|1261
5TBW|1|sR|U|1262

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c0

40S ribosomal protein S10-A

Chain c2

40S ribosomal protein S12

Chain d9

40S ribosomal protein S29-A

Chain e1

Ubiquitin-40S ribosomal protein S31