IL_5TBW_506

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

5TBW|1|A|U|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_506 not in the Motif Atlas

Homologous match to IL_8P9A_427

Geometric discrepancy: 0.5661

The information below is about IL_8P9A_427

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

5TBW|1|A|G|1051
5TBW|1|A|U|1052
5TBW|1|A|G|1053
*
5TBW|1|A|C|1066
5TBW|1|A|C|1067

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein S0-A

Chain C

40S ribosomal protein S1-A

Chain S

40S ribosomal protein S17-A

Chain c

40S ribosomal protein S27-A