IL_5TBW_517

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

5TBW|1|sR|A|1346, 5TBW|1|sR|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TBW_517 not in the Motif Atlas

Homologous match to IL_8P9A_445

Geometric discrepancy: 0.1459

The information below is about IL_8P9A_445

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

5TBW|1|sR|A|1345
5TBW|1|sR|A|1346
5TBW|1|sR|U|1347
5TBW|1|sR|A|1348
*
5TBW|1|sR|U|1377
5TBW|1|sR|U|1378
5TBW|1|sR|C|1379
5TBW|1|sR|U|1380

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain d0

40S ribosomal protein S20