IL_5TGA_161

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUACA*UGUAAUU

Length

13 nucleotides

Bulged bases

5TGA|1|2|A|506

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGA|1|2|G|480
5TGA|1|2|A|481
5TGA|1|2|U|482
5TGA|1|2|A|483
5TGA|1|2|C|484
5TGA|1|2|A|485
*
5TGA|1|2|U|502
5TGA|1|2|G|503
5TGA|1|2|U|504
5TGA|1|2|A|505
5TGA|1|2|A|506
5TGA|1|2|U|507
5TGA|1|2|U|508

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E0

40S ribosomal protein S30-A

Chain S9

40S ribosomal protein S9-A