IL_5TGA_193

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAAUAAGGA*UUUUG

Length

14 nucleotides

Bulged bases

5TGA|1|2|G|1228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGA|1|2|C|1222
5TGA|1|2|A|1223
5TGA|1|2|A|1224
5TGA|1|2|U|1225
5TGA|1|2|A|1226
5TGA|1|2|A|1227
5TGA|1|2|G|1228
5TGA|1|2|G|1229
5TGA|1|2|A|1230
*
5TGA|1|2|U|1257
5TGA|1|2|U|1258
5TGA|1|2|U|1259
5TGA|1|2|U|1260
5TGA|1|2|G|1261

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C0

40S ribosomal protein S10-A

Chain C2

40S ribosomal protein S12

Chain E1

Ubiquitin-40S ribosomal protein S31