IL_5TGA_261

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AU*AAU

Length

5 nucleotides

Bulged bases

5TGA|1|5|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGA_261 not in the Motif Atlas

Geometric match to IL_4V9F_025

Geometric discrepancy: 0.1378

The information below is about IL_4V9F_025

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

5TGA|1|5|A|828
5TGA|1|5|U|829
*
5TGA|1|5|A|895
5TGA|1|5|A|896
5TGA|1|5|U|897

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l2

60S ribosomal protein L2-A

Chain o4

60S ribosomal protein L34-A

Chain q3

60S ribosomal protein L43-A