IL_5TGA_289

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

5TGA|1|5|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGA_289 not in the Motif Atlas

Geometric match to IL_5D8H_003

Geometric discrepancy: 0.156

The information below is about IL_5D8H_003

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

5TGA|1|5|G|1262
5TGA|1|5|A|1263
5TGA|1|5|G|1264
5TGA|1|5|U|1265
5TGA|1|5|G|1266
*
5TGA|1|5|C|1275
5TGA|1|5|U|1276
5TGA|1|5|C|1277

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m2

60S Ribosomal Protein L12