IL_5TGA_484

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

5TGA|1|5|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5TGA_484 not in the Motif Atlas

Homologous match to IL_8P9A_264

Geometric discrepancy: 0.4005

The information below is about IL_8P9A_264

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25463.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

5TGA|1|5|C|977
5TGA|1|5|G|978
5TGA|1|5|U|979
5TGA|1|5|A|980
5TGA|1|5|U|981
*
5TGA|1|5|A|1102
5TGA|1|5|A|1103
5TGA|1|5|G|1104

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l7

60S ribosomal protein L7-A

Chain m8

60S ribosomal protein L18-A

Chain n9

60S ribosomal protein L29